mkt.databases.plot_config.RegionGapViolinConfig

class mkt.databases.plot_config.RegionGapViolinConfig(figsize: list[float] = <factory>, height_ratios: list[float] = <factory>, width_ratios: list[float] = <factory>, hspace: float = 0.12, wspace: float = 0.06, left_adjust: float = 0.05, right_adjust: float = 0.985, top_adjust: float = 0.97, bottom_adjust: float = 0.085, use_ribbon: bool = False, inter_color: str = '#cfcfcf', intra_color: str = '#8c8c8c', ribbon_alpha: float = 0.3, map_name_fontsize: int = 21, map_range_fontsize: int = 17, map_track_fontsize: int = 25, map_region_fontsize: int = 12, map_ellipsis_fontsize: int = 32, map_legend_fontsize: int = 17, violin_fontsize: int = 22, fill_alpha: float = 0.3, violin_width: float = 0.85, violin_linewidth: float = 1.0, violin_edgecolor: str = '#333333', jitter_size: float = 7.0, jitter_std: float = 0.06, jitter_alpha: float = 0.8, jitter_edgecolor: str = 'black', jitter_linewidth: float = 0.25, jitter_mixed_color: str = 'orange', grid_alpha: float = 0.3, text_color: str = '#333333', ylabel_text: str = 'Number of residues', filename: str = 'region_gap_violin')

Bases: object

Aesthetics for the combined UniProt->KLIFS map + region-gap violin figure.

The figure stacks the UniProt-to-KLIFS residue map (top, spanning the full width) over two grouped violin panels (inter- and intra-region gaps) on separate log-scaled axes. All statistics are computed on the fly.

__init__(figsize: list[float] = <factory>, height_ratios: list[float] = <factory>, width_ratios: list[float] = <factory>, hspace: float = 0.12, wspace: float = 0.06, left_adjust: float = 0.05, right_adjust: float = 0.985, top_adjust: float = 0.97, bottom_adjust: float = 0.085, use_ribbon: bool = False, inter_color: str = '#cfcfcf', intra_color: str = '#8c8c8c', ribbon_alpha: float = 0.3, map_name_fontsize: int = 21, map_range_fontsize: int = 17, map_track_fontsize: int = 25, map_region_fontsize: int = 12, map_ellipsis_fontsize: int = 32, map_legend_fontsize: int = 17, violin_fontsize: int = 22, fill_alpha: float = 0.3, violin_width: float = 0.85, violin_linewidth: float = 1.0, violin_edgecolor: str = '#333333', jitter_size: float = 7.0, jitter_std: float = 0.06, jitter_alpha: float = 0.8, jitter_edgecolor: str = 'black', jitter_linewidth: float = 0.25, jitter_mixed_color: str = 'orange', grid_alpha: float = 0.3, text_color: str = '#333333', ylabel_text: str = 'Number of residues', filename: str = 'region_gap_violin') → None

Methods

__eq__(other)	Return self==value.
__init__([figsize, height_ratios, ...])
preprint_2026()	Preset used by the 2026 preprint figures (current defaults).

Attributes

__dataclass_fields__
__dataclass_params__
__match_args__
bottom_adjust
filename
fill_alpha
grid_alpha
hspace
inter_color
intra_color
jitter_alpha
jitter_edgecolor
jitter_linewidth
jitter_mixed_color
jitter_size
jitter_std
left_adjust
map_ellipsis_fontsize
map_legend_fontsize
map_name_fontsize
map_range_fontsize
map_region_fontsize
map_track_fontsize
ribbon_alpha
right_adjust
text_color
top_adjust
use_ribbon
violin_edgecolor
violin_fontsize
violin_linewidth
violin_width
wspace
ylabel_text
figsize
height_ratios
width_ratios

__init__(figsize: list[float] = <factory>, height_ratios: list[float] = <factory>, width_ratios: list[float] = <factory>, hspace: float = 0.12, wspace: float = 0.06, left_adjust: float = 0.05, right_adjust: float = 0.985, top_adjust: float = 0.97, bottom_adjust: float = 0.085, use_ribbon: bool = False, inter_color: str = '#cfcfcf', intra_color: str = '#8c8c8c', ribbon_alpha: float = 0.3, map_name_fontsize: int = 21, map_range_fontsize: int = 17, map_track_fontsize: int = 25, map_region_fontsize: int = 12, map_ellipsis_fontsize: int = 32, map_legend_fontsize: int = 17, violin_fontsize: int = 22, fill_alpha: float = 0.3, violin_width: float = 0.85, violin_linewidth: float = 1.0, violin_edgecolor: str = '#333333', jitter_size: float = 7.0, jitter_std: float = 0.06, jitter_alpha: float = 0.8, jitter_edgecolor: str = 'black', jitter_linewidth: float = 0.25, jitter_mixed_color: str = 'orange', grid_alpha: float = 0.3, text_color: str = '#333333', ylabel_text: str = 'Number of residues', filename: str = 'region_gap_violin') → None

bottom_adjust: float = 0.085

figsize: list[float]

filename: str = 'region_gap_violin'

fill_alpha: float = 0.3

grid_alpha: float = 0.3

height_ratios: list[float]

hspace: float = 0.12

inter_color: str = '#cfcfcf'

intra_color: str = '#8c8c8c'

jitter_alpha: float = 0.8

jitter_edgecolor: str = 'black'

jitter_linewidth: float = 0.25

jitter_mixed_color: str = 'orange'

jitter_size: float = 7.0

jitter_std: float = 0.06

left_adjust: float = 0.05

map_ellipsis_fontsize: int = 32

map_legend_fontsize: int = 17

map_name_fontsize: int = 21

map_range_fontsize: int = 17

map_region_fontsize: int = 12

map_track_fontsize: int = 25

classmethod preprint_2026() → RegionGapViolinConfig

Preset used by the 2026 preprint figures (current defaults).

ribbon_alpha: float = 0.3

right_adjust: float = 0.985

text_color: str = '#333333'

top_adjust: float = 0.97

use_ribbon: bool = False

violin_edgecolor: str = '#333333'

violin_fontsize: int = 22

violin_linewidth: float = 1.0

violin_width: float = 0.85

width_ratios: list[float]

wspace: float = 0.06

ylabel_text: str = 'Number of residues'