mkt.databases.plot_config.PlotDatasetConfig

class mkt.databases.plot_config.PlotDatasetConfig(matplotlib_rc: ~mkt.databases.plot_config.MatplotlibRCConfig = <factory>, family_colors: ~mkt.databases.plot_config.FamilyColorConfig = <factory>, col_kinase_colors: ~mkt.databases.plot_config.ColKinaseColorConfig = <factory>, dynamic_range: ~mkt.databases.plot_config.DynamicRangePlotConfig = <factory>, ridgeline: ~mkt.databases.plot_config.RidgelinePlotConfig = <factory>, stacked_barchart: ~mkt.databases.plot_config.StackedBarchartConfig = <factory>, venn_diagram: ~mkt.databases.plot_config.VennDiagramConfig = <factory>, metrics_boxplot: ~mkt.databases.plot_config.MetricsBoxplotConfig = <factory>, sequence_schematic: ~mkt.databases.plot_config.SequenceSchematicConfig = <factory>, data_sources: ~mkt.databases.plot_config.DataSourceConfig = <factory>, output: ~mkt.databases.plot_config.OutputConfig = <factory>)

Bases: object

Top-level config aggregating all sub-configs.

__init__(matplotlib_rc: ~mkt.databases.plot_config.MatplotlibRCConfig = <factory>, family_colors: ~mkt.databases.plot_config.FamilyColorConfig = <factory>, col_kinase_colors: ~mkt.databases.plot_config.ColKinaseColorConfig = <factory>, dynamic_range: ~mkt.databases.plot_config.DynamicRangePlotConfig = <factory>, ridgeline: ~mkt.databases.plot_config.RidgelinePlotConfig = <factory>, stacked_barchart: ~mkt.databases.plot_config.StackedBarchartConfig = <factory>, venn_diagram: ~mkt.databases.plot_config.VennDiagramConfig = <factory>, metrics_boxplot: ~mkt.databases.plot_config.MetricsBoxplotConfig = <factory>, sequence_schematic: ~mkt.databases.plot_config.SequenceSchematicConfig = <factory>, data_sources: ~mkt.databases.plot_config.DataSourceConfig = <factory>, output: ~mkt.databases.plot_config.OutputConfig = <factory>) → None

Methods

__eq__(other)	Return self==value.
__init__([matplotlib_rc, family_colors, ...])
from_yaml(config_path)	Load a PlotDatasetConfig from a YAML file.

Attributes

__dataclass_fields__
__dataclass_params__
__match_args__
matplotlib_rc
family_colors
col_kinase_colors
dynamic_range
ridgeline
stacked_barchart
venn_diagram
metrics_boxplot
sequence_schematic
data_sources
output

__init__(matplotlib_rc: ~mkt.databases.plot_config.MatplotlibRCConfig = <factory>, family_colors: ~mkt.databases.plot_config.FamilyColorConfig = <factory>, col_kinase_colors: ~mkt.databases.plot_config.ColKinaseColorConfig = <factory>, dynamic_range: ~mkt.databases.plot_config.DynamicRangePlotConfig = <factory>, ridgeline: ~mkt.databases.plot_config.RidgelinePlotConfig = <factory>, stacked_barchart: ~mkt.databases.plot_config.StackedBarchartConfig = <factory>, venn_diagram: ~mkt.databases.plot_config.VennDiagramConfig = <factory>, metrics_boxplot: ~mkt.databases.plot_config.MetricsBoxplotConfig = <factory>, sequence_schematic: ~mkt.databases.plot_config.SequenceSchematicConfig = <factory>, data_sources: ~mkt.databases.plot_config.DataSourceConfig = <factory>, output: ~mkt.databases.plot_config.OutputConfig = <factory>) → None

col_kinase_colors: ColKinaseColorConfig

data_sources: DataSourceConfig

dynamic_range: DynamicRangePlotConfig

family_colors: FamilyColorConfig

classmethod from_yaml(config_path: str | Path) → PlotDatasetConfig

Load a PlotDatasetConfig from a YAML file.

Parameters:

config_pathstr | Path

Path to the YAML configuration file.

Returns:

PlotDatasetConfig

Fully populated config instance.

matplotlib_rc: MatplotlibRCConfig

metrics_boxplot: MetricsBoxplotConfig

output: OutputConfig

ridgeline: RidgelinePlotConfig

sequence_schematic: SequenceSchematicConfig

stacked_barchart: StackedBarchartConfig

venn_diagram: VennDiagramConfig