mkt.schema.kinase_schema.KinCoreFASTA

class mkt.schema.kinase_schema.KinCoreFASTA(*, seq: ~typing.Annotated[str, ~pydantic.types.StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=None, max_length=None, pattern=^[ACDEFGHIKLMNPQRSTVWXY]+$)], group: ~mkt.schema.kinase_schema.Group, hgnc: set[str], swissprot: str, uniprot: ~typing.Annotated[str, ~pydantic.types.StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=None, max_length=None, pattern=^[A-Z][0-9][A-Z0-9]{3}[0-9](_[12])?$)] | ~typing.Annotated[str, ~pydantic.types.StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=None, max_length=None, pattern=^[A-Z][0-9][A-Z][A-Z0-9]{2}[0-9][A-Z][A-Z0-9]{2}[0-9](_[12])?$)], start_md: int, end_md: int, length_md: int | None = None, start_af2: int | None = None, end_af2: int | None = None, length_af2: int | None = None, length_uniprot: int | None = None, source_file: str, start: int | None = None, end: int | None = None, mismatch: list[int] | None = None)[source]

Bases: BaseModel

Pydantic model for KinCore FASTA information.

__init__(**data: Any) → None

Create a new model by parsing and validating input data from keyword arguments.

Raises [ValidationError][pydantic_core.ValidationError] if the input data cannot be validated to form a valid model.

self is explicitly positional-only to allow self as a field name.

Attributes

`seq`
`group`
`hgnc`
`swissprot`
`uniprot`
`start_md`
`end_md`
`length_md`
`start_af2`
`end_af2`
`length_af2`
`length_uniprot`
`source_file`
`start`
`end`
`mismatch`

end: int | None

end_af2: int | None

end_md: int

group: Group

hgnc: set[str]

length_af2: int | None

length_md: int | None

length_uniprot: int | None

mismatch: list[int] | None

seq: StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=None, max_length=None, pattern=^[ACDEFGHIKLMNPQRSTVWXY]+$)]

source_file: str

start: int | None

start_af2: int | None

start_md: int

swissprot: str

uniprot: StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=None, max_length=None, pattern=^[A-Z][0-9][A-Z][A-Z0-9]{2}[0-9][A-Z][A-Z0-9]{2}[0-9](_[12])?$)]