mkt.databases.oncokb.OncoKBInfo

class mkt.databases.oncokb.OncoKBInfo(url: str = 'https://www.oncokb.org/api/v1', header: dict = <factory>)

Bases: OncoKB

OncoKB API client for OncoKB information.

__init__(url: str = 'https://www.oncokb.org/api/v1', header: dict = <factory>) → None

Methods

__eq__(other)	Return self==value.
__init__([url, header])
__post_init__()	Initialize the OncoKB API client.
_stamp_from_response(res)	Record query datetime + cache provenance from a requests-cache response.
_stamp_now()	Record current UTC datetime; cache provenance unknown.
check_response(res)	Check the response status code for errors.
extract_level_as_int(str_in)	Extract the level from a string and convert it to an integer.
has_json()	Get the JSON response from the OncoKB API query.
maybe_get_token()	Get API token, if available.
query_api()	Query the OncoKB API for a given URL.
set_api_key()	Set API token for REST API.
update_url()	Update the URL for the OncoKB API query based on the gene name.

Attributes

__dataclass_fields__
__dataclass_params__
__match_args__
_json
from_cache	Whether the most recent response was served from requests-cache.
query_datetime	UTC datetime the underlying network query was made (cache creation time if served from cache).
url	Base URL for the OncoKB API.
url_query	URL to update for specific queries.
header	OncoKB API token, if available.

update_url()

Update the URL for the OncoKB API query based on the gene name.