mkt.databases.kinase_schema.KinaseInfoUniProtGenerator

class mkt.databases.kinase_schema.KinaseInfoUniProtGenerator(*, hgnc_name: str, uniprot_id: ~typing.Annotated[str, ~pydantic.types.StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=None, max_length=None, pattern=^[A-Z][0-9][A-Z0-9]{3}[0-9](_[12])?$)] | ~typing.Annotated[str, ~pydantic.types.StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=None, max_length=None, pattern=^[A-Z][0-9][A-Z][A-Z0-9]{2}[0-9][A-Z][A-Z0-9]{2}[0-9](_[12])?$)], uniprot: ~mkt.schema.kinase_schema.UniProt, pfam: ~mkt.schema.kinase_schema.Pfam | None = None)

Bases: KinaseInfoUniProt

Pydantic model for to generate KinaseInfoUniProt (kinase info at the level of the UniProt ID).

__init__(**data: Any) → None

Create a new model by parsing and validating input data from keyword arguments.

Raises [ValidationError][pydantic_core.ValidationError] if the input data cannot be validated to form a valid model.

self is explicitly positional-only to allow self as a field name.

Methods

validate_phosphosites2canonicalseq()	Validate phosphosites match canonical sequence.
validate_uniprot_length()	Validate canonical UniProt sequence length matches Pfam length if Pfam not None.

Attributes

hgnc_name
uniprot_id
uniprot
pfam

validate_phosphosites2canonicalseq() → Self

Validate phosphosites match canonical sequence.

validate_uniprot_length() → Self

Validate canonical UniProt sequence length matches Pfam length if Pfam not None.