mkt.databases.cli.generate_conservation_data.main

mkt.databases.cli.generate_conservation_data.main(metric: ~typing.Annotated[str, <typer.models.OptionInfo object at 0x7754019d5ae0>] = 'blosum', linkage_method: ~typing.Annotated[str, <typer.models.OptionInfo object at 0x7754019d5b70>] = 'average', weighting: ~typing.Annotated[str, <typer.models.OptionInfo object at 0x7754019d5c00>] = 'none', conservation_threshold: ~typing.Annotated[float, <typer.models.OptionInfo object at 0x7754019d5c90>] = 0.8, exclude_pseudokinases: ~typing.Annotated[bool, <typer.models.OptionInfo object at 0x7754019d5d20>] = False, output_dir: ~typing.Annotated[~pathlib.Path | None, <typer.models.OptionInfo object at 0x7754019d5db0>] | None = None, verbose: ~typing.Annotated[bool, <typer.models.OptionInfo object at 0x7754019d5e70>] = False) → None[source]

Generate and serialize the KLIFS conservation-data artifact.

Examples:

# default panel (BLOSUM62 + UPGMA), shipped as package data generate_conservation_data

# percent-identity metric, complete linkage, custom output directory generate_conservation_data –metric identity –linkage-method complete -o ./out