mkt.databases.alphafold.AlphaFoldStructure

class mkt.databases.alphafold.AlphaFoldStructure(uniprot_id: str, url: str = 'https://alphafold.ebi.ac.uk/api', headers: str = "{'Accept': 'application/json'}", _json: dict | None = None, _cif: str | None = None)

Bases: AlphaFoldPrediction

Class to download the mmCIF file from the AlphaFold EBI server.

Inherits from AlphaFoldPrediction and uses the cifUrl from the prediction JSON to download and store the CIF content.

Parameters:

uniprot_idstr

UniProt accession (e.g. “P00533”).

__init__(*args: Any, **kwargs: Any) → None

Methods

__eq__(other)	Return self==value.
__post_init__()
_download_cif()	Download the mmCIF file from the cifUrl in the prediction JSON.
_stamp_from_response(res)	Record query datetime + cache provenance from a requests-cache response.
_stamp_now()	Record current UTC datetime; cache provenance unknown.
check_response(res)	Check the response status code for errors.
query_api()	Query the AlphaFold prediction endpoint and populate _json.

Attributes

__dataclass_fields__
__dataclass_params__
__match_args__
__pydantic_config__
_cif	mmCIF file content downloaded from AlphaFold.
_json	JSON response from the AlphaFold API.
from_cache	Whether the most recent response was served from requests-cache.
headers	Header for the API request.
query_datetime	UTC datetime the underlying network query was made (cache creation time if served from cache).
url	Base URL for the AlphaFold EBI API.
uniprot_id	UniProt accession to query.

_download_cif() → None

Download the mmCIF file from the cifUrl in the prediction JSON.

Returns:

None