mkt.databases.aligners.Kincore2UniProtAligner

class mkt.databases.aligners.Kincore2UniProtAligner(substitution_matrix: str = 'BLOSUM90', mode: str = 'local', gap_score: int = -5, extend_gap_score: int = -1)

Bases: BioAligner

__init__(substitution_matrix: str = 'BLOSUM90', mode: str = 'local', gap_score: int = -5, extend_gap_score: int = -1) → None

Methods

__eq__(other)	Return self==value.
__init__([substitution_matrix, mode, ...])
__post_init__()
align(seq1, seq2)	Abstract method for aligning sequences.

Attributes

__dataclass_fields__
__dataclass_params__
__match_args__
extend_gap_score	Gap extension score.
gap_score	Gap score.
mode	Alignment mode.
substitution_matrix	Substitution matrix used.

__init__(substitution_matrix: str = 'BLOSUM90', mode: str = 'local', gap_score: int = -5, extend_gap_score: int = -1) → None

mode: str = 'local'

Alignment mode. Default is “local.

Type:

str