mkt.databases.conservation.KLIFSHierarchicalConservation
========================================================

.. currentmodule:: mkt.databases.conservation

.. autoclass:: KLIFSHierarchicalConservation
   :members:
   :private-members:
   :show-inheritance:
   :inherited-members:

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~KLIFSHierarchicalConservation._aggregate_singletons
      ~KLIFSHierarchicalConservation._annotation_callouts
      ~KLIFSHierarchicalConservation._annotation_lines
      ~KLIFSHierarchicalConservation._blosum_distance_matrix
      ~KLIFSHierarchicalConservation._conserved_columns
      ~KLIFSHierarchicalConservation._drop_pseudokinases
      ~KLIFSHierarchicalConservation._encode_pockets
      ~KLIFSHierarchicalConservation._family_label
      ~KLIFSHierarchicalConservation._family_name
      ~KLIFSHierarchicalConservation._henikoff_weights
      ~KLIFSHierarchicalConservation._hover_families
      ~KLIFSHierarchicalConservation._identity_distance_matrix
      ~KLIFSHierarchicalConservation._is_kept
      ~KLIFSHierarchicalConservation._kinome_background
      ~KLIFSHierarchicalConservation._member_style
      ~KLIFSHierarchicalConservation._nodelist
      ~KLIFSHierarchicalConservation._pseudocount_model
      ~KLIFSHierarchicalConservation._uniprot_index_at
      ~KLIFSHierarchicalConservation._walk_node
      ~KLIFSHierarchicalConservation.analyze_nodes
      ~KLIFSHierarchicalConservation.build_display_tree
      ~KLIFSHierarchicalConservation.compute_distance_matrix
      ~KLIFSHierarchicalConservation.cophenetic_correlation
      ~KLIFSHierarchicalConservation.critical_depth
      ~KLIFSHierarchicalConservation.from_conservation_data
      ~KLIFSHierarchicalConservation.gather_children
      ~KLIFSHierarchicalConservation.group_concordance
      ~KLIFSHierarchicalConservation.members_consensus
      ~KLIFSHierarchicalConservation.node_conservation
      ~KLIFSHierarchicalConservation.node_information
      ~KLIFSHierarchicalConservation.nodes_summary
      ~KLIFSHierarchicalConservation.plot_critical_depth
      ~KLIFSHierarchicalConservation.residue_dot_layout
      ~KLIFSHierarchicalConservation.to_conservation_data
      ~KLIFSHierarchicalConservation.tree_children
      ~KLIFSHierarchicalConservation.tree_count
      ~KLIFSHierarchicalConservation.tree_members
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~KLIFSHierarchicalConservation.names
      ~KLIFSHierarchicalConservation.pockets
      ~KLIFSHierarchicalConservation.groups
      ~KLIFSHierarchicalConservation.position_labels
      ~KLIFSHierarchicalConservation.metric
      ~KLIFSHierarchicalConservation.blosum_name
      ~KLIFSHierarchicalConservation.linkage_method
      ~KLIFSHierarchicalConservation.conservation_threshold
      ~KLIFSHierarchicalConservation.min_child_members
      ~KLIFSHierarchicalConservation.weighting
      ~KLIFSHierarchicalConservation.exclude_pseudokinases
      ~KLIFSHierarchicalConservation.gap_chars
      ~KLIFSHierarchicalConservation.distance_matrix
      ~KLIFSHierarchicalConservation.linkage_matrix
      ~KLIFSHierarchicalConservation.tree
      ~KLIFSHierarchicalConservation._node_records
      ~KLIFSHierarchicalConservation._nodelist_cache
      ~KLIFSHierarchicalConservation._kinome_bg_cache
      ~KLIFSHierarchicalConservation._pssm_cache